1Y1D

Crystal structure of transthyretin in complex with iododiflunisal

Structural Biology Knowledgebase: 1Y1D SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.222
  • R-Value Work: 0.197

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1Y1D

Classification: TRANSPORT PROTEIN

Total Structure Weight: 28307.20

Macromolecule Entities
Molecule Chains Length Organism Details
Transthyretin A, B 127 Homo sapiens Gene Name(s): TTR Gene View PALB

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FHI
Query on FHI

A, B 2',4'-DIFLUORO-4-HYDROXY-5-IODO-1,1'-BIPHENYL- 3-CARBOXYLIC ACID
IODODIFLUNISAL (Synonym)
C13 H7 F2 I O3
SSYOLLIRAAWGDJ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.222
  • R-Value Work: 0.197
  • Space Group: P 21 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 43.31 α = 90.00
b = 85.84 β = 90.00
c = 64.86 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2004-11-18
  • Released Date: 2005-07-26
  • Deposition author(s): Gales, L., Macedo-Ribeiro, S., Arsequell, G., Valencia, G., Saraiva, M.J., Damas, A.M.

Revision History

  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4