X-ray strucutre of an Echinomycin-(GCGTACGC)2 complex     DOI:10.2210/pdb1xvk/pdb   NDB ID: DD0066

1XVK Display Files close FASTA Sequence PDB File PDB File (Header) mmCIF File mmCIF File (Header) PDBML/XML File PDBML/XML File (Header) Download Files close FASTA Sequence PDB File (Text) PDB File (gz) mmCIF File mmCIF File (gz) PDBML/XML File PDBML/XML File (gz) Structure Factor (Text) Structure Factor (gz) Biological Assembly (gz) (A) Print this Page Share this Page close Email Delicious Stumble Google More... Link this Page

Primary Citation       Molecular Description Hide Classification: DNA Structure Weight: 3098.64   Molecule: 5'-D(*GP*CP*GP*TP*AP*CP*GP*C)-3' Polymer: 1 Type: polydeoxyribonucleotide Length: 8 Chains: A       Source Hide Polymer: 1 Scientific Name: Synthetic construct         Related PDB Entries Hide Id Details 1PFE    1XVN    1XVR          Ligand Chemical Component Hide Identifier Name Formula Interaction View Links ALA     ALANINE C3 H7 N O2 Ligand Explorer DSN     D-SERINE C3 H7 N O3 Ligand Explorer MG     MAGNESIUM ION Mg Ligand Explorer MVA     N-METHYLVALINE C6 H13 N O2 Ligand Explorer N2C     N,S-DIMETHYLCYSTEINE C5 H11 N O2 S Ligand Explorer NCY     N-METHYLCYSTEINE C4 H9 N O2 S Ligand Explorer QUI     2-CARBOXYQUINOXALINE C9 H6 N2 O2 Ligand Explorer SCC     THIOETHYL GROUP C2 H6 S Ligand Explorer SER     SERINE C3 H7 N O3 Ligand Explorer       Modified Residues Hide Identifier Name Formula Interaction View Links DSN D-SERINE(type: dPeptideLinking) C3 H7 N O3 ALA ALANINE(type: lPeptideLinking) C3 H7 N O2 MVA N-METHYLVALINE (parent: VAL)(type: lPeptideLinking) C6 H13 N O2 SER SERINE(type: lPeptideLinking) C3 H7 N O3     Reset Layout

Biological Assembly     More Images... View in Jmol Other Viewers close KiNG WebMol FirstGlance Kiosk SimpleViewer Protein Workshop Ligand Explorer Biological assembly assigned by authors         Deposition Summary Hide Authors:   Cuesta-Seijo, J.A.,   Sheldrick, G.M. Deposition:   2004-10-28 Release:   2005-04-12 Last Modified (REVDAT):   2009-02-24       Experimental Details Hide Method:   X-RAY DIFFRACTION Experimental Data:    [ EDS ] Resolution[Å]: 1.26 R-Value: 0.183 (obs.) R-Free: 0.221 Space Group: P 63 2 2 Unit Cell:   Length [Å] Angles [°] a = 39.18 α = 90.00  b = 39.18 β = 90.00  c = 79.89 γ = 120.00