1XUF

TRYPSIN-BABIM-ZN+2, PH 8.2

Structural Biology Knowledgebase: 1XUF SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.229
  • R-Value Work: 0.153

Literature

Macromolecules
Sequence Display for 1XUF

Classification: SERINE PROTEASE

Total Structure Weight: 23762.23

Macromolecule Entities
Molecule Chains Length Organism Details
TRYPSIN A 223 Bos taurus EC#: 3.4.21.4 IUBMB
Details: TRYPSIN/ZN+2/SMALL MOLECULE LIGAND COMPLEX
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Membrane Protein

Source: inferred by homology | Group: BETA-BARREL

Subgroup Name: Omp85-TpsB Outer Membrane Transporter Superfamily

Protein Name: BamABCDE complex of the Bam β-barrel assembly machine


Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
BAZ
Query on BAZ

A BIS(5-AMIDINO-BENZIMIDAZOLYL)METHANE ZINC
C17 H16 N8 Zn
YKSMKIJLUWPKOX-WQJIRFJUDM
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
BAZ N/A in BindingDB
Ki: 90 nM  BindingMOAD
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.229
  • R-Value Work: 0.153
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 54.80 α = 90.00
b = 58.70 β = 90.00
c = 67.60 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1997-10-10
  • Released Date: 1998-12-16
  • Deposition author(s): Katz, B.A., Clark, J.M., Finer-Moore, J.S., Jenkins, T.E., Johnson, C.R., Rose, M.J., Luong, C., Moore, W.R., Stroud, R.M.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Atom occupancy | Details: Restore author's atom occupancy