1XOK

crystal structure of alfalfa mosaic virus RNA 3'UTR in complex with coat protein N terminal peptide

Structural Biology Knowledgebase: 1XOK SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.269
  • R-Value Work: 0.249

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1XOK

Classification: Viral protein / RNA

Total Structure Weight: 18060.93


Macromolecule Entities
Molecule Chains Length Organism Details
Coat protein C, D 26 Alfalfa mosaic virus Fragment: amv coat protein residues 1-26
Gene Name(s): ORF3b
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
alfalfa mosaic virus RNA 3' UTR A 30 synthetic
alfalfa mosaic virus RNA 3' UTR B 9 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
BR
Query on BR

A BROMIDE ION
Br
CPELXLSAUQHCOX-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.269
  • R-Value Work: 0.249
  • Space Group: C 2 2 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 50.10 α = 90.00
b = 123.00 β = 90.00
c = 53.60 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2004-10-06
  • Released Date: 2005-01-04
  • Deposition author(s): Guogas, L.M., Filman, D.J., Hogle, J.M., Gehrke, L.

Revision History

  • 2011-07-13
    Type: Flag residual B-value | Details: Tagged residual B temperature factor
  • 2011-07-13
    Type: Refinement description | Details: Fixed TLS group
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4