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crystal structure of alfalfa mosaic virus RNA 3'UTR in complex with coat protein N terminal peptide
DOI:10.2210/pdb1xok/pdb   NDB ID: PR0141
1XOK
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Viral Protein/rna
    Structure Weight: 18060.94
    Molecule: alfalfa mosaic virus RNA 3' UTR
    Polymer: 1 Type: rna Length: 30
    Chains: A
    Fragment: amv rna bases 843-872
    Molecule: alfalfa mosaic virus RNA 3' UTR
    Polymer: 2 Type: rna Length: 9
    Chains: B
    Fragment: amv rna bases 873-881
    Molecule: Coat protein
    Polymer: 3 Type: protein Length: 26
    Chains: C, D
    Fragment: amv coat protein residues 1-26
    Organism: Alfalfa mosaic virus (strain YSMV)
    Gene Name: ORF3b
    UniProtKB: Protein Feature View | Search PDB | P24264  
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 3
    Scientific Name: Synthetic construct (Alfalfa mosaic virus (strain YSMV))   Taxonomy    
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    BR
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    BR Br
    BROMIDE ION
     
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  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: PR0141
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors
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  •   Deposition Summary Hide
    Authors:   Guogas, L.M.,  Filman, D.J.,  Hogle, J.M.,  Gehrke, L.

    Deposition:   2004-10-06
    Release:   2005-01-04
    Last Modified (REVDAT):   2011-07-13
     
  •   Revision History    Hide
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    2011-07-13
    Flag residual B-value
    2011-07-13
    Refinement description
    2011-07-13
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  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   3.00
    R-Value: 0.251 (obs.)
    R-Free: 0.269
    Space Group: C 2 2 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 50.10 α = 90.00 
    b = 123.00 β = 90.00 
    c = 53.60 γ = 90.00