1XJI

Bacteriorhodopsin crystallized in bicelles at room temperature


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.256
  • R-Value Work: 0.226

Literature

Macromolecules
Sequence Display for 1XJI

Classification: MEMBRANE PROTEIN

Total Structure Weight: 29150.70

Macromolecule Entities
Molecule Chains Length Organism Details
Bacteriorhodopsin A 247 Halobacterium salinarum Gene Name(s): bop VNG_1467G
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Membrane Protein

Source: inferred by homology | Group: ALPHA-HELICAL

Subgroup Name: Bacterial and Algal Rhodopsins

Protein Name: Bacteriorhodopsin (BR)


Small Molecules
Ligands 6 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CPS
Query on CPS

A 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1- PROPANESULFONATE
CHAPS (Synonym)
C32 H58 N2 O7 S
UMCMPZBLKLEWAF-BCTGSCMUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
RET
Query on RET

A RETINAL
C20 H28 O
NCYCYZXNIZJOKI-OVSJKPMPSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
C14
Query on C14

A TETRADECANE
C14 H30
BGHCVCJVXZWKCC-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
D12
Query on D12

A DODECANE
C12 H26
SNRUBQQJIBEYMU-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
D10
Query on D10

A DECANE
C10 H22
DIOQZVSQGTUSAI-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
OCT
Query on OCT

A N-OCTANE
C8 H18
TVMXDCGIABBOFY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.256
  • R-Value Work: 0.226
  • Space Group: C 2 2 21

Unit Cell:

Length (Å) Angle (°)
a = 44.66 α = 90.00
b = 102.51 β = 90.00
c = 128.24 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2004-09-23
  • Released Date: 2005-04-19
  • Deposition author(s): Faham, S., Boulting, G.L., Massey, E.A., Yohannan, S., Yang, D., Bowie, J.U.

Revision History

  • Version 1_0: 2005-04-19

    Type: Initial release

  • Version 1_1: 2008-04-30

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance