1XF2

Structure of Fab DNA-1 complexed with dT3

Structural Biology Knowledgebase: 1XF2 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.242
  • R-Value Work: 0.202

Literature

Macromolecules
Sequence Display for 1XF2

Classification: IMMUNE SYSTEM / DNA

Total Structure Weight: 98256.59


Macromolecule Entities
Molecule Chains Length Organism Details
antibody light chain Fab A, L 214 Mus musculus
antibody heavy chain Fab B, H 230 Mus musculus
Macromolecule Entities
Molecule Chains Length Organism Details
5'-D(*TP*TP*T)-3' T 3 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A, L SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.242
  • R-Value Work: 0.202
  • Space Group: P 65 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 170.68 α = 90.00
b = 170.68 β = 90.00
c = 144.67 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2004-09-13
  • Released Date: 2005-04-12
  • Deposition author(s): Schuermann, J.P., Prewitt, S.P., Deutscher, S.L., Tanner, J.J.

Revision History

  • 2011-07-13
    Type: Flag residual B-value | Details: Tagged residual B temperature factor
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4