1X6U

KDO8P synthase in it's binary complex with the product KDO8P


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.280
  • R-Value Work: 0.239

Literature

Macromolecules
Sequence Display for 1X6U

Classification: TRANSFERASE

Total Structure Weight: 31188.85

Macromolecule Entities
Molecule Chains Length Organism Details
2-dehydro-3-deoxyphosphooctonate aldolase A 284 Escherichia coli EC#: 2.5.1.55 IUBMB
Gene Name(s): kdsA b1215 JW1206
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
DO8
Query on DO8

A 3-DEOXY-D-MANNO-2-OCTULOSONATE-8-PHOSPHATE
C8 H15 O11 P
IZZNRKJLBIYBJN-HXUQBWEZSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
DO8 N/A in BindingDB
N/A in BindingMoad
Ki: 600000 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.280
  • R-Value Work: 0.239
  • Space Group: I 2 3

Unit Cell:

Length (Å) Angle (°)
a = 118.53 α = 90.00
b = 118.53 β = 90.00
c = 118.53 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2004-08-12
  • Released Date: 2005-07-26
  • Deposition author(s): Vainer, R., Belakhov, V., Rabkin, E., Baasov, T., Adir, N.

Revision History

  • 2008-04-30
    Type: Version format compliance
  • 2011-07-13
    Type: Derived calculations, Version format compliance