1WOE

X-ray structure of a Z-DNA hexamer d(CGCGCG)

Structural Biology Knowledgebase: 1WOE SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.206
  • R-Value Work: 0.176

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1WOE

Classification: DNA

Total Structure Weight: 3822.78

Macromolecule Entities
Molecule Chains Length Organism Details
Z-DNA hexamer A, B 6 synthetic

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SPM
Query on SPM

A SPERMINE
C10 H26 N4
PFNFFQXMRSDOHW-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
DOD
Query on DOD

A, B DEUTERATED WATER
D2 O
XLYOFNOQVPJJNP-ZSJDYOACSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.206
  • R-Value Work: 0.176
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 18.46 α = 90.00
b = 30.76 β = 90.00
c = 43.18 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2004-08-15
  • Released Date: 2005-07-26
  • Deposition author(s): Chatake, T., Tanaka, I., Umino, H., Arai, S., Niimura, N.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update