1WCO

The solution structure of the nisin-lipid II complex


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 200
  • Conformers Submitted: 20
  • Selection Criteria: Rmsd Clustering and Lowest Total Energy

Literature

Macromolecules
Sequence Display for 1WCO

Classification: PEPTIDE / ANTIBIOTIC

Total Structure Weight: 4695.46

Macromolecule Entities
Molecule Chains Length Organism Details
NAG-MUB-ALA-FGA-LYS-DAL-DAL PEPTIDE L 7 Monarthropalpus flavus
NISIN Z N 34 Lactococcus lactis Gene Name(s): nisZ
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FPP
Query on FPP

N FARNESYL DIPHOSPHATE
C15 H28 O7 P2
VWFJDQUYCIWHTN-YFVJMOTDSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Biologically Interesting Molecules 1 Unique
ID Chains Name Type/Class 2D Diagram 3D Interactions
PRD_000200
Query on PRD_000200
N Nisin A Polypeptide /
Lantibiotic
Ligand Explorer
Modified Residues 3 Unique
ID Chains Type Formula 2D Diagram Parent
NAG
Query on NAG
L D-SACCHARIDE C8 H15 N O6 --
MUB
Query on MUB
L NON-POLYMER C11 H19 N O8 --
FGA
Query on FGA
L D-gamma-peptide, C-delta linking C5 H9 N O4 --

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 200
  • Conformers Submitted: 20
  • Selection Criteria: RMSD CLUSTERING AND LOWEST TOTAL ENERGY

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2004-11-19
  • Released Date: 2005-03-07
  • Deposition author(s): Hsu, S.-T.D., Breukink, E., Tischenko, E., Lutters, M.A.G., de Kruijff, B., Kaptein, R., Bonvin, A.M.J.J., van Nuland, N.A.J.
  • Previous versions: 1UZT

Revision History

  • 2011-07-13
    Type: Atomic model, Database references, Derived calculations, Structure summary, Version format compliance
  • 2012-11-30
    Type: Other