1W55

Structure of the Bifunctional IspDF from Campylobacter jejuni


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.222
  • R-Value Work: 0.167

Literature

Macromolecules
Sequence Display for 1W55

Classification: TRANSFERASE

Total Structure Weight: 42791.05

Macromolecule Entities
Molecule Chains Length Organism Details
ISPD/ISPF BIFUNCTIONAL ENZYME A 371 Campylobacter jejuni EC#: 2.7.7.60 IUBMB 4.6.1.12 IUBMB
Gene Name(s): ispDF Cj1607
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
C
Query on C

A CYTIDINE-5'-MONOPHOSPHATE
C9 H14 N3 O8 P
IERHLVCPSMICTF-XVFCMESISA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GPP
Query on GPP

A GERANYL DIPHOSPHATE
C10 H20 O7 P2
GVVPGTZRZFNKDS-JXMROGBWSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.222
  • R-Value Work: 0.167
  • Space Group: P 63 2 2

Unit Cell:

Length (Å) Angle (°)
a = 108.76 α = 90.00
b = 108.76 β = 90.00
c = 161.26 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2004-08-05
  • Released Date: 2004-10-04
  • Deposition author(s): Gabrielsen, M., Bond, C.S., Hunter, W.N.

Revision History

  • Version 1_0: 2004-10-04

    Type: Initial release

  • Version 1_1: 2011-05-08

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance