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A THIOPHENE BASED DIAMIDINE FORMS A "SUPER" AT BINDING MINOR GROOVE AGENT
 
 
DOI:10.2210/pdb1vzk/pdb   NDB ID: 1VZK
1VZK
 
Primary Citation
spinning wheel
 
 
  •  
    Move Section Molecular Description Hide
    Classification: Nucleic Acid
    Structure Weight: 7711.58
     
    Molecule:5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP *CP*G)-3'
    Polymer:1Type:polydeoxyribonucleotideLength:12
    Chains:A, B
     
     
  •  
    Move Section Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct Go to NCBI Taxonomy entry  
     
     
  •  
    Move Section Related PDB Entries Hide
    Id Details
    2DBE  DNA (5'- D( CP GP CP GP AP AP TP TP CP GP CP GP)-3') COMPLEXED WITH BERENIL (DIMINAZENE ACETURATE) (1,3-BIS(4'-AMIDINOPHENYL)TRIAZENE) 
     
     
  •  
    Move Section Ligand Chemical Component Hide
    Identifier Name Formula Interaction View Links
    D1B     2-(5-{4-[AMINO(IMINO)METHYL]PHENYL}-2-THIENYL)- 1H-BENZIMIDAZOLE-6
    - CARBOXIMIDAMIDE DIHYDROCHLORIDE     		C19 H16 N6 S 3DLigand Explorer Link out to Ligand Expos:D1B Link out to SuperLigands:D1B Link out to SuperHapten:D1B
    MG     MAGNESIUM ION Mg 3DLigand Explorer Link out to Ligand Expos:MG Link out to SuperLigands:MG Link out to SuperHapten:MG
     
     
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Biological assembly assigned by authors and generated by PQS (software)
 
 
 
  •  
    Move Section Deposition Summary Hide
    Authors:   Mallena, S.,   Lee, M.P.H.,   Bailly, C.,   Neidle, S.,   Kumar, A.,   Boykin, D.W.,   Wilson, W.D.

    Deposition:   2004-05-20
    Release:   2004-10-25
    Last Modified (REVDAT):   2009-02-24
     
     
  •  
    Move Section Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Experimental Data:   Download Structure Factors  [ EDS External Link to EDS ]
    View a histogram of Resolution Resolution[Å]: 1.77
    R-Value: 0.227 (obs.)
    R-Free: 0.295
    Space Group: P 21 21 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 25.68 α = 90.00 
    b = 39.92 β = 90.00 
    c = 65.18 γ = 90.00