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Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements. This file, 1VSA, contains the 50S ribosome subunit. 30S ribosome subunit is in the file 2OW8
DOI:10.2210/pdb1vsa/pdb   NDB ID: RR0164
1VSA
ENTRY 1VSA SUPERSEDES 1VS9
Split Entry
The asymmetric unit for this structure is composed of multiple PDB entries:
1VSA   2OW8  
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The complete entry has been assigned PDB ID 4V4I and is available for download in PDBx/mmCIF and PDBML/XML formats from the FTP archive at:
ftp://ftp.wwpdb.org/pub/pdb/data/large_structures/mmCIF/4v4i.cif.gz
ftp://ftp.wwpdb.org/pub/pdb/data/large_structures/XML/4v4i.xml.gz
 
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Ribosome
    Structure Weight: 1388753.62
    Molecule: 23S LARGE SUBUNIT RIBOSOMAL RNA
    Polymer: 1 Type: rna Length: 2889
    Chains: w
    Organism: Thermus thermophilus HB27
    Molecule: 5S LARGE SUBUNIT RIBOSOMAL RNA
    Polymer: 2 Type: rna Length: 121
    Chains: x
    Organism: Thermus thermophilus HB27
    Molecule: 50S ribosomal protein L1
    Polymer: 3 Type: protein Length: 229
    Chains: A
    Organism: Thermus thermophilus HB27
    Gene Names: rplA TT_C1739
    UniProtKB: Protein Feature View | Search PDB | Q72GV9  
    Molecule: 50S ribosomal protein L2
    Polymer: 4 Type: protein Length: 276
    Chains: B
    Organism: Thermus thermophilus HB27
    Gene Names: rplB TT_C1325
    UniProtKB: Protein Feature View | Search PDB | Q72I07  
    Molecule: 50S ribosomal protein L3
    Polymer: 5 Type: protein Length: 206
    Chains: C
    Organism: Thermus thermophilus HB27
    Gene Names: rplC TT_C1328
    UniProtKB: Protein Feature View | Search PDB | Q72I04  
    Molecule: 50S ribosomal protein L4
    Polymer: 6 Type: protein Length: 205
    Chains: D
    Organism: Thermus thermophilus HB27
    Gene Names: rplD TT_C1327
    UniProtKB: Protein Feature View | Search PDB | Q72I05  
    Molecule: 50S ribosomal protein L5
    Polymer: 7 Type: protein Length: 182
    Chains: E
    Organism: Thermus thermophilus HB27
    Gene Names: rplE TT_C1316
    UniProtKB: Protein Feature View | Search PDB | Q72I16  
    Molecule: 50S ribosomal protein L6
    Polymer: 8 Type: protein Length: 180
    Chains: F
    Organism: Thermus thermophilus HB27
    Gene Names: rplF TT_C1313
    UniProtKB: Protein Feature View | Search PDB | Q72I19  
    Molecule: 50S ribosomal protein L9
    Polymer: 9 Type: protein Length: 148
    Chains: G
    Organism: Thermus thermophilus HB27
    Gene Names: rplI TT_C1743
    UniProtKB: Protein Feature View | Search PDB | Q72GV5  
    Molecule: 50S ribosomal protein L13
    Polymer: 10 Type: protein Length: 163
    Chains: H
    Organism: Thermus thermophilus HB27
    Gene Names: rplM TT_C1101
    UniProtKB: Protein Feature View | Search PDB | Q72IN1  
    Molecule: 50S ribosomal protein L14
    Polymer: 11 Type: protein Length: 122
    Chains: I
    Organism: Thermus thermophilus HB27
    Gene Names: rplN TT_C1318
    UniProtKB: Protein Feature View | Search PDB | Q72I14  
    Molecule: 50S ribosomal protein L15
    Polymer: 12 Type: protein Length: 150
    Chains: J
    Organism: Thermus thermophilus HB27
    Gene Names: rplO TT_C1309
    UniProtKB: Protein Feature View | Search PDB | Q72I23  
    Molecule: 50S ribosomal protein L16
    Polymer: 13 Type: protein Length: 141
    Chains: K
    Organism: Thermus thermophilus HB27
    Gene Names: rplP TT_C1321
    UniProtKB: Protein Feature View | Search PDB | Q72I11  
    Molecule: 50S ribosomal protein L17
    Polymer: 14 Type: protein Length: 118
    Chains: L
    Organism: Thermus thermophilus HB27
    Gene Names: rplQ TT_C1299
    UniProtKB: Protein Feature View | Search PDB | Q72I33  
    Molecule: 50S ribosomal protein L18
    Polymer: 15 Type: protein Length: 112
    Chains: M
    Organism: Thermus thermophilus HB27
    Gene Names: rplR TT_C1312
    UniProtKB: Protein Feature View | Search PDB | Q72I20  
    Molecule: 50S ribosomal protein L19
    Polymer: 16 Type: protein Length: 146
    Chains: N
    Organism: Thermus thermophilus HB27
    Gene Names: rplS TT_C0669
    UniProtKB: Protein Feature View | Search PDB | Q72JU9  
    Molecule: 50S ribosomal protein L20
    Polymer: 17 Type: protein Length: 118
    Chains: O
    Organism: Thermus thermophilus HB27
    Gene Names: rplT TT_C0185
    UniProtKB: Protein Feature View | Search PDB | Q72L76  
    Molecule: 50S ribosomal protein L21
    Polymer: 18 Type: protein Length: 101
    Chains: P
    Organism: Thermus thermophilus HB27
    Gene Names: rplU TT_C1424
    UniProtKB: Protein Feature View | Search PDB | Q72HR2  
    Molecule: 50S ribosomal protein L22
    Polymer: 19 Type: protein Length: 113
    Chains: Q
    Organism: Thermus thermophilus HB27
    Gene Names: rplV TT_C1323
    UniProtKB: Protein Feature View | Search PDB | Q72I09  
    Molecule: 50S ribosomal protein L23
    Polymer: 20 Type: protein Length: 96
    Chains: R
    Organism: Thermus thermophilus HB27
    Gene Names: rplW TT_C1326
    UniProtKB: Protein Feature View | Search PDB | Q72I06  
    Molecule: 50S ribosomal protein L24
    Polymer: 21 Type: protein Length: 110
    Chains: S
    Organism: Thermus thermophilus HB27
    Gene Names: rplX TT_C1317
    UniProtKB: Protein Feature View | Search PDB | Q72I15  
    Molecule: 50S ribosomal protein L25
    Polymer: 22 Type: protein Length: 206
    Chains: T
    Organism: Thermus thermophilus HB27
    Gene Names: rplY ctc TT_C1225
    UniProtKB: Protein Feature View | Search PDB | Q72IA7  
    Molecule: 50S ribosomal protein L27
    Polymer: 23 Type: protein Length: 85
    Chains: U
    Organism: Thermus thermophilus HB27
    Gene Names: rpmA TT_C1423
    UniProtKB: Protein Feature View | Search PDB | Q72HR3  
    Molecule: 50S ribosomal protein L28
    Polymer: 24 Type: protein Length: 98
    Chains: V
    Organism: Thermus thermophilus HB27
    Gene Names: rpmB TT_C1964
    UniProtKB: Protein Feature View | Search PDB | Q72G84  
    Molecule: 50S ribosomal protein L29
    Polymer: 25 Type: protein Length: 72
    Chains: W
    Organism: Thermus thermophilus HB27
    Gene Names: rpmC TT_C1320
    UniProtKB: Protein Feature View | Search PDB | Q72I12  
    Molecule: 50S ribosomal protein L30
    Polymer: 26 Type: protein Length: 60
    Chains: X
    Organism: Thermus thermophilus HB27
    Gene Names: rpmD TT_C1310
    UniProtKB: Protein Feature View | Search PDB | Q72I22  
    Molecule: 50S ribosomal protein L32
    Polymer: 27 Type: protein Length: 60
    Chains: Y
    Organism: Thermus thermophilus HB27
    Gene Names: rpmF rpl32 TT_C0050
    UniProtKB: Protein Feature View | Search PDB | P62652  
    Molecule: 50S ribosomal protein L34
    Polymer: 28 Type: protein Length: 49
    Chains: Z
    Organism: Thermus thermophilus HB27
    Gene Names: rpmH rpl34 TTHA0446
    UniProtKB: Protein Feature View | Search PDB | P80340  
    Molecule: 50S ribosomal protein L35
    Polymer: 29 Type: protein Length: 65
    Chains: a
    Organism: Thermus thermophilus HB27
    Gene Names: rpmI TT_C0184
    UniProtKB: Protein Feature View | Search PDB | Q72L77  
    Molecule: 50S ribosomal protein L36
    Polymer: 30 Type: protein Length: 37
    Chains: b
    Organism: Thermus thermophilus HB27
    Gene Names: rpmJ TT_C1304
    UniProtKB: Protein Feature View | Search PDB | Q72I28  
     
  •   Structure Validation Hide

    Download full validation report    

     

  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 2
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 3
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 4
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 5
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 6
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 7
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 8
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 9
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 10
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 11
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 12
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 13
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 14
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 15
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 16
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 17
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 18
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 19
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 20
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 21
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 22
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 23
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 24
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 25
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 26
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 27
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 28
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 29
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 30
    Scientific Name: Thermus thermophilus   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    1GIX  CRYSTAL STRUCTURE OF a 70S RIBOSOME AT 5.5 A RESOLUTION. 30S SUBUNIT WITH 3 TRNAS AND MRNA MOLECULES 
    1GIY  CRYSTAL STRUCTURE OF a 70S RIBOSOME AT 5.5 A RESOLUTION. 50S SUBUNIT 
    2OW8  same structure, 30S SUBUNIT 
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: RR0164
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Composite of PDB entries (1VSA and 2OW8)