The structure of CCDA-PHE-CAP-BIO bound to the a site of the ribosomal subunit of haloarcula marismortui     DOI:10.2210/pdb1vqk/pdb   NDB ID: RR0106

1VQK Display Files close FASTA Sequence PDB File PDB File (Header) mmCIF File mmCIF File (Header) PDBML/XML File PDBML/XML File (Header) Download Files close FASTA Sequence PDB File (Text) PDB File (gz) mmCIF File mmCIF File (gz) PDBML/XML File PDBML/XML File (gz) Structure Factor (Text) Structure Factor (gz) Biological Assembly (gz) (A) Print this Page Share this Page close Email Delicious Stumble Google More... Link this Page

Primary Citation       Molecular Description Hide Classification: Ribosome Structure Weight: 1489972.06   Molecule: 23S ribosomal rna Polymer: 1 Type: polyribonucleotide Length: 2922 Chains: 0 Molecule: 5S ribosomal RNA Polymer: 2 Type: polyribonucleotide Length: 122 Chains: 9 Molecule: 5'-R(*CP*CP*(DA)*(PHE)*(ACA))-3' Polymer: 3 Type: polyribonucleotide Length: 5 Chains: 4 Molecule: 50S ribosomal protein L2P Polymer: 4 Type: polypeptide(L) Length: 240 Chains: A Molecule: 50S ribosomal protein L3P Polymer: 5 Type: polypeptide(L) Length: 338 Chains: B Molecule: 50S ribosomal protein L4E Polymer: 6 Type: polypeptide(L) Length: 246 Chains: C Molecule: 50S ribosomal protein L5P Polymer: 7 Type: polypeptide(L) Length: 177 Chains: D Molecule: 50S ribosomal protein L6P Polymer: 8 Type: polypeptide(L) Length: 178 Chains: E Molecule: 50S ribosomal protein L7AE Polymer: 9 Type: polypeptide(L) Length: 120 Chains: F Molecule: ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG Polymer: 10 Type: polypeptide(L) Length: 348 Chains: G Molecule: 50S RIBOSOMAL PROTEIN L10E Polymer: 11 Type: polypeptide(L) Length: 171 Chains: H Molecule: 50S ribosomal protein L13P Polymer: 12 Type: polypeptide(L) Length: 145 Chains: J Molecule: 50S ribosomal protein L14P Polymer: 13 Type: polypeptide(L) Length: 132 Chains: K Molecule: 50S ribosomal protein L15P Polymer: 14 Type: polypeptide(L) Length: 165 Chains: L Molecule: 50S Ribosomal Protein L15E Polymer: 15 Type: polypeptide(L) Length: 195 Chains: M Molecule: 50S ribosomal protein L18P Polymer: 16 Type: polypeptide(L) Length: 187 Chains: N Molecule: 50S ribosomal protein L18e Polymer: 17 Type: polypeptide(L) Length: 116 Chains: O Molecule: 50S ribosomal protein L19E Polymer: 18 Type: polypeptide(L) Length: 149 Chains: P Molecule: 50S ribosomal protein L21e Polymer: 19 Type: polypeptide(L) Length: 96 Chains: Q Molecule: 50S ribosomal protein L22P Polymer: 20 Type: polypeptide(L) Length: 155 Chains: R Molecule: 50S ribosomal protein L23P Polymer: 21 Type: polypeptide(L) Length: 85 Chains: S Molecule: 50S ribosomal protein L24P Polymer: 22 Type: polypeptide(L) Length: 120 Chains: T Molecule: 50S ribosomal protein L24E Polymer: 23 Type: polypeptide(L) Length: 66 Chains: U Molecule: 50S ribosomal protein L29P Polymer: 24 Type: polypeptide(L) Length: 71 Chains: V Molecule: 50S ribosomal protein L30P Polymer: 25 Type: polypeptide(L) Length: 154 Chains: W Molecule: 50S ribosomal protein L31e Polymer: 26 Type: polypeptide(L) Length: 92 Chains: X Molecule: 50S ribosomal protein L32E Polymer: 27 Type: polypeptide(L) Length: 241 Chains: Y Molecule: 50S ribosomal protein L37Ae Polymer: 28 Type: polypeptide(L) Length: 83 Chains: Z Molecule: 50S ribosomal protein L37e Polymer: 29 Type: polypeptide(L) Length: 57 Chains: 1 Molecule: 50S ribosomal protein L39e Polymer: 30 Type: polypeptide(L) Length: 50 Chains: 2 Molecule: 50S ribosomal protein L44E Polymer: 31 Type: polypeptide(L) Length: 92 Chains: 3 Molecule: 50S RIBOSOMAL PROTEIN L11P Polymer: 32 Type: polypeptide(L) Length: 162 Chains: I       Source Hide Polymer: 1 Scientific Name: Haloarcula marismortui   Polymer: 2 Scientific Name: Haloarcula marismortui   Polymer: 3 Scientific Name: Synthetic construct   Polymer: 4 Scientific Name: Haloarcula marismortui   Polymer: 5 Scientific Name: Haloarcula marismortui   Polymer: 6 Scientific Name: Haloarcula marismortui   Polymer: 7 Scientific Name: Haloarcula marismortui   Polymer: 8 Scientific Name: Haloarcula marismortui   Polymer: 9 Scientific Name: Haloarcula marismortui   Polymer: 10 Scientific Name: Haloarcula marismortui   Polymer: 11 Scientific Name: Haloarcula marismortui   Polymer: 12 Scientific Name: Haloarcula marismortui   Polymer: 13 Scientific Name: Haloarcula marismortui   Polymer: 14 Scientific Name: Haloarcula marismortui   Polymer: 15 Scientific Name: Haloarcula marismortui   Polymer: 16 Scientific Name: Haloarcula marismortui   Polymer: 17 Scientific Name: Haloarcula marismortui   Polymer: 18 Scientific Name: Haloarcula marismortui   Polymer: 19 Scientific Name: Haloarcula marismortui   Polymer: 20 Scientific Name: Haloarcula marismortui   Polymer: 21 Scientific Name: Haloarcula marismortui   Polymer: 22 Scientific Name: Haloarcula marismortui   Polymer: 23 Scientific Name: Haloarcula marismortui   Polymer: 24 Scientific Name: Haloarcula marismortui   Polymer: 25 Scientific Name: Haloarcula marismortui   Polymer: 26 Scientific Name: Haloarcula marismortui   Polymer: 27 Scientific Name: Haloarcula marismortui   Polymer: 28 Scientific Name: Haloarcula marismortui   Polymer: 29 Scientific Name: Haloarcula marismortui   Polymer: 30 Scientific Name: Haloarcula marismortui   Polymer: 31 Scientific Name: Haloarcula marismortui   Polymer: 32 Scientific Name: Haloarcula marismortui         Related PDB Entries Hide Id Details 1FFK    1FFZ    1FGO    1JJ2    1KQS    1M90    1Q7Y    1Q81    1Q82    1Q86    1QVF    1QVG    1S72    1VQ4    1VQ5    1VQ6    1VQ7    1VQ8    1VQ9    1VQL    1VQM    1VQN    1VQO    1VQP          Ligand Chemical Component Hide Identifier Name Formula Interaction View Links CD     CADMIUM ION Cd Ligand Explorer CL     CHLORIDE ION Cl Ligand Explorer K     POTASSIUM ION K Ligand Explorer MG     MAGNESIUM ION Mg Ligand Explorer NA     SODIUM ION Na Ligand Explorer SR     STRONTIUM ION Sr Ligand Explorer       Modified Residues Hide Identifier Name Formula Interaction View Links 1MA 6-HYDRO-1-METHYLADENOSINE-5'-MONOPHOSPHATE (parent: A)(type: rnaLinking) C11 H18 N5 O7 P Ligand Explorer OMU O2'-METHYLURIDINE 5'-MONOPHOSPHATE (parent: U)(type: rnaLinking) C10 H15 N2 O9 P Ligand Explorer OMG O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE (parent: G)(type: rnaLinking) C11 H16 N5 O8 P Ligand Explorer UR3 3-METHYLURIDINE-5'-MONOPHOSHATE (parent: U)(type: rnaLinking) C10 H15 N2 O9 P Ligand Explorer PSU PSEUDOURIDINE-5'-MONOPHOSPHATE (parent: U)(type: rnaLinking) C9 H13 N2 O9 P Ligand Explorer ACA 6-AMINOHEXANOIC ACID(type: nonPolymer) C6 H13 N O2 Ligand Explorer       Derived Data Hide SCOP Classification v1.75 - (31 Domains) CATH Classification v3.2.0 - (36 Domains) PFAM Classification - (30 Domains) GO Terms - (222 Terms)     Reset Layout

Biological Assembly     More Images... View in Jmol Other Viewers close KiNG WebMol QuickPDB FirstGlance Kiosk SimpleViewer Protein Workshop Ligand Explorer Biological assembly assigned by authors         Deposition Summary Hide Authors:   Schmeing, T.M.,   Steitz, T.A. Deposition:   2004-12-16 Release:   2005-11-29 Last Modified (REVDAT):   2009-02-24       Experimental Details Hide Method:   X-RAY DIFFRACTION Experimental Data:   Resolution[Å]: 2.30 R-Value: 0.218 (work) R-Free: 0.250 Space Group: C 2 2 21 Unit Cell:   Length [Å] Angles [°] a = 211.87 α = 90.00  b = 298.57 β = 90.00  c = 575.39 γ = 90.00        Structure Links Hide Molecule of the Month Features: Ribosome 70S Ribosomes