1VK8

CRYSTAL STRUCTURE OF A PUTATIVE THIAMINE BIOSYNTHESIS/SALVAGE PROTEIN (TM0486) FROM THERMOTOGA MARITIMA AT 1.80 A RESOLUTION

Structural Biology Knowledgebase: 1VK8 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.190
  • R-Value Work: 0.142

Literature

Macromolecules
Sequence Display for 1VK8

Classification: BIOSYNTHETIC PROTEIN

Total Structure Weight: 49695.60

Macromolecule Entities
Molecule Chains Length Organism Details
hypothetical protein TM0486 A, B, C, D 106 Thermotoga maritima Mutation: M1M, M35M, M54M
Details: protein with possible role in cell wall biogenesis
Gene Name(s): TM_0486 Tmari_0483
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
UNL
Query on UNL

Unknown ligand
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B, C, D L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

Unit Cell:

Length (Å) Angle (°)
a = 47.65 α = 73.80
b = 47.65 β = 62.90
c = 49.61 γ = 73.62

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2004-05-05
  • Released Date: 2004-05-18
  • Deposition author(s): Joint Center for Structural Genomics (JCSG)

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Flag residual B-value | Details: Tagged residual B temperature factor