1VJM

Deformation of helix C in the low-temperature L-intermediate of bacteriorhodopsin


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.298
  • R-Value Work: 0.252

Literature

Macromolecules
Sequence Display for 1VJM

Classification: TRANSPORT PROTEIN

Total Structure Weight: 27213.94

Macromolecule Entities
Molecule Chains Length Organism Details
Bacteriorhodopsin A 249 Halobacterium sp. Gene Name(s): bop VNG_1467G
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Membrane Protein

Source: inferred by homology | Group: ALPHA-HELICAL

Subgroup Name: Bacterial and Algal Rhodopsins

Protein Name: Bacteriorhodopsin (BR)


Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
RET
Query on RET

A RETINAL
C20 H28 O
NCYCYZXNIZJOKI-OVSJKPMPSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.298
  • R-Value Work: 0.252
  • Space Group: P 63

Unit Cell:

Length (Å) Angle (°)
a = 60.87 α = 90.00
b = 60.87 β = 90.00
c = 109.50 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2004-03-12
  • Released Date: 2004-04-06
  • Deposition author(s): Edman, K., Royant, A., Larsson, G., Jacobson, F., Taylor, T., van der Spoel, D., Landau, E.M., Pebay-Peyroula, E., Neutze, R.
  • Previous versions: 1R3P

Revision History

  • 2008-04-26
    Type: Version format compliance
  • 2011-07-13
    Type: Derived calculations, Version format compliance