Crystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Product with C75U Mutaion, cleaved in Imidazole and Mg2+ solutions     DOI:10.2210/pdb1vc6/pdb   NDB ID: PR0120

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Primary Citation       Molecular Description Hide Classification: Translation/rna Structure Weight: 35990.60   Molecule: Hepatitis Delta virus ribozyme Polymer: 1 Type: polyribonucleotide Length: 76 Chains: B Mutation: C75U Molecule: U1 small nuclear ribonucleoprotein A Polymer: 2 Type: polypeptide(L) Length: 100 Chains: A Fragment: U1A_RBD(residues 1-100) Mutation: Y31H/Q36R       Source Hide Polymer: 1 Scientific Name: Synthetic construct   Polymer: 2 Scientific Name: Homo sapiens Common Name: Human Expression System: Escherichia coli         Related PDB Entries Hide Id Details 1CX0  cleaved HDV ribozyme  1DRZ  cleaved HDV ribozyme  1SJF  the same protein/RNA(C75U) complex in Cobalt Hexammine solution  1VBX  the same protein/RNA(C75U) complex in EDTA solution  1VBY  the same protein/RNA(C75U) complex and Mn2+ bound  1VBZ  the same protein/RNA(C75U) complex in Ba2+ solution  1VC0  the same protein/RNA(C75U) complex in Imidazole and Sr2+ solutions  1VC5  the same protein/RNA(wild type) complex in EDTA solution  1VC7  the same protein/RNA(C75U) complex in Sr2+ solution        Ligand Chemical Component Hide Identifier Name Formula Interaction View Links MG     MAGNESIUM ION Mg Ligand Explorer       Derived Data Hide SCOP Classification v1.75 - (1 Domains) CATH Classification v3.2.0 - (1 Domains) PFAM Classification - (1 Domains) GO Terms - (10 Terms)     Reset Layout

Biological Assembly     More Images... View in Jmol Other Viewers close KiNG WebMol QuickPDB FirstGlance Kiosk SimpleViewer Protein Workshop Ligand Explorer Biological assembly assigned by authors         Deposition Summary Hide Authors:   Ke, A.,   Zhou, K.,   Ding, F.,   Cate, J.H.D.,   Doudna, J.A. Deposition:   2004-03-04 Release:   2004-05-18 Last Modified (REVDAT):   2009-02-24       Experimental Details Hide Method:   X-RAY DIFFRACTION Experimental Data:   Resolution[Å]: 2.80 R-Value: 0.247 (obs.) R-Free: 0.284 Space Group: H 3 2 Unit Cell:   Length [Å] Angles [°] a = 109.16 α = 90.00  b = 109.16 β = 90.00  c = 190.60 γ = 120.00        Structure Links Hide Molecule of the Month Features: Self-splicing RNA