Crystal structure of d(GCGAGAGC): the DNA octaplex structure with I-motif of G-quartet
DOI:10.2210/pdb1v3p/pdb   NDB ID: UD0048
1V3P
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: DNA
    Structure Weight: 5283.32
    Molecule: 5'-D(*GP*(C38)P*GP*AP*GP*AP*GP*C)-3'
    Polymer: 1 Type: dna Length: 8
    Chains: A, B
     
  •   Structure Validation Hide

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  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    1V3N   The same structure, Br-derivative 
    1V3O   The same structure, I-derivative 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    K
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    K K
    POTASSIUM ION
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    C38
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    C38 C9 H13 I N3 O7 P DC dnaLinking
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure:UD0048
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
Biological assembly 1 assigned by authors
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  •   Deposition Summary Hide
    Authors:   Kondo, J.,  Umeda, S.,  Sunami, T.,  Takenaka, A.

    Deposition:   2003-11-03
    Release:   2004-06-08
    Last Modified (REVDAT):   2009-09-15
     
  •   Revision History    Hide
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    2011-07-13
    Version format compliance
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
    N/A
    Resolution[Å]:   2.30
    R-Value: 0.234 (work)
    R-Free: 0.265
    Space Group: I 2 2 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 36.18 α = 90.00 
    b = 36.38 β = 90.00 
    c = 63.12 γ = 90.00