1V0C

STRUCTURE OF AAC(6')-IB IN COMPLEX WITH KANAMYCIN C AND ACETYLCOA.

Structural Biology Knowledgebase: 1V0C SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.225
  • R-Value Work: 0.177

Literature

Macromolecules
Sequence Display for 1V0C

Classification: TRANSFERASE

Total Structure Weight: 23759.44

Macromolecule Entities
Molecule Chains Length Organism Details
AAC(6')-IB A 202 Escherichia coli EC#: 2.3.1.82 IUBMB
Mutation: R102W, Y179D
Gene Name(s): AAC(6')-Ib aac(6')-Ib-cr aac(6`)-Ib-cr aacA-aphD aacA4 AM268_25155 ASU34_17965 AZ95_0017 B634_00009 pCTXM15_EC8_00014 pEcNDM0_00009 pHKU1_04 SK67_05179 SK84_05080 SK86_03325
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ACO
Query on ACO

A ACETYL COENZYME *A
C23 H38 N7 O17 P3 S
ZSLZBFCDCINBPY-ZSJPKINUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
KNC
Query on KNC

A KANAMYCIN C
C18 H36 N4 O11
WZDRWYJKESFZMB-FQSMHNGLSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.225
  • R-Value Work: 0.177
  • Space Group: P 43 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 57.40 α = 90.00
b = 57.40 β = 90.00
c = 147.11 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-03-20
  • Released Date: 2008-09-02
  • Deposition author(s): Vetting, M.W., Park, C.H., Hedge, S.S., Hooper, D.C., Blanchard, J.S.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4