1UVN

THE STRUCTURAL BASIS FOR RNA SPECIFICITY AND CA2 INHIBITION OF AN RNA-DEPENDENT RNA POLYMERASE PHI6P2 CA2+ INHIBITION COMPLEX

Structural Biology Knowledgebase: 1UVN SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.257
  • R-Value Work: 0.234

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1UVN

Classification: POLYMERASE

Total Structure Weight: 233626.32


Macromolecule Entities
Molecule Chains Length Organism Details
RNA-DEPENDENT RNA POLYMERASE A, C, E 664 Pseudomonas phage phi6 EC#: 2.7.7.48 IUBMB
Mutation: I456M
Gene Name(s): P2
Macromolecule Entities
Molecule Chains Length Organism Details
5'-R(*UP*UP*UP*UP*CP*CP)-3' B, D, F 6 synthetic

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GTP
Query on GTP

A, C, E GUANOSINE-5'-TRIPHOSPHATE
C10 H16 N5 O14 P3
XKMLYUALXHKNFT-UUOKFMHZSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MN
Query on MN

A, C, E MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A, C, E CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.257
  • R-Value Work: 0.234
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 105.50 α = 90.00
b = 92.13 β = 101.01
c = 140.76 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2004-01-21
  • Released Date: 2004-02-26
  • Deposition author(s): Salgado, P.S., Makeyev, E.V., Butcher, S., Bamford, D., Stuart, D.I., Grimes, J.M.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4