NMR Ensemble

1UUD

NMR STRUCTURE OF A SYNTHETIC SMALL MOLECULE, RBT203, BOUND TO HIV-1 TAR RNA

Structural Biology Knowledgebase: 1UUD SBKB.org


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 50
  • Conformers Submitted: 1
  • Selection Criteria: Least Restrraint Violation Energy

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1UUD

Classification: HIV-1

Total Structure Weight: 9661.09

Macromolecule Entities
Molecule Chains Length Organism Details
RNA (5'-(*GP*GP*CP*AP*GP*AP*UP*CP*UP*GP*AP*GP *CP*CP*UP*GP*GP*GP*AP*GP*CP*UP*CP*UP*CP*UP*GP*CP*C) -3') B 29 Human immunodeficiency virus 1 BULGED STEM LOOP REGION FROM 5'LTR OF HIV-1 MRNA-BINDING SITE FOR TRANSCRIPTIONAL ACTIVATOR PROTEIN TAT.

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
P14
Query on P14

B N-[2-(2-{[(4-{[AMINO(IMINO)METHYL]AMINO}BUTYL)AMINO]METHYL}- 4-METHOXYPHENOXY)ETHYL]GUANIDINE
RBT203 INHIBITOR (Synonym)
C16 H31 N7 O2
ZCQAXURCNFAREC-UHFFFAOYSA-P
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
P14 N/A in BindingDB
N/A in BindingMoad
Ki: 1540 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 50
  • Conformers Submitted: 1
  • Selection Criteria: LEAST RESTRRAINT VIOLATION ENERGY

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2003-12-18
  • Released Date: 2004-03-15
  • Deposition author(s): Davis, B., Afshar, M., Varani, G., Karn, J., Murchie, A.I.H., Lentzen, G., Drysdale, M.J., Potter, A.J., Bower, J., Aboul-Ela, F.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4