NMR Ensemble

1UTS

DESIGNED HIV-1 TAR BINDING LIGAND

Structural Biology Knowledgebase: 1UTS SBKB.org


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 50
  • Conformers Submitted: 16
  • Selection Criteria: Least Restraint Violation Energy

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1UTS

Classification: HIV-1

Total Structure Weight: 9715.17

Macromolecule Entities
Molecule Chains Length Organism Details
RNA (5'-(*GP*GP*CP*AP*GP*AP*UP*CP*UP*GP*AP*GP *CP*CP*UP*GP*GP*GP*AP*GP*CP*UP*CP*UP*CP*UP*GP*CP*C) -3') B 29 Human immunodeficiency virus 1 CONTAINS TAR BULGE (BINDING SITE FOR HIV-1 TAT) AND STEM-LOOP (BINDING SITE FOR CYCLIN/CDK9

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
P13
Query on P13

B N-[2-(3-AMINOPROPOXY)-5-(1H-INDOL-5-YL)BENZYL]- N-(2-PIPERAZIN-1-YLETHYL)AMINE
RBT550 INHIBITOR (Synonym)
C24 H33 N5 O
WVRJFVULANTNJW-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
P13 N/A in BindingDB
N/A in BindingMoad
Ki: 39 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 50
  • Conformers Submitted: 16
  • Selection Criteria: LEAST RESTRAINT VIOLATION ENERGY

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2003-12-10
  • Released Date: 2004-02-12
  • Deposition author(s): Davis, B., Murchie, A.I.H., Aboul-Ela, F., Karn, J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4