1UMY

BHMT FROM RAT LIVER

Structural Biology Knowledgebase: 1UMY SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.291
  • R-Value Work: 0.253

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1UMY

Classification: TRANSFERASE

Total Structure Weight: 180640.98

Macromolecule Entities
Molecule Chains Length Organism Details
BETAINE--HOMOCYSTEINE S-METHYLTRANSFERASE A, B, C, D 407 Rattus norvegicus EC#: 2.1.1.5 IUBMB
Mutation: H247Q, A248P
Details: ZN BOUND FORM
Gene Name(s): Bhmt

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
BME
Query on BME

A, B BETA-MERCAPTOETHANOL
C2 H6 O S
DGVVWUTYPXICAM-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A, B, C, D ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.291
  • R-Value Work: 0.253
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 57.83 α = 90.00
b = 149.27 β = 92.92
c = 96.25 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-09-02
  • Released Date: 2004-05-06
  • Deposition author(s): Gonzalez, B., Pajares, M.A., Sanz-Aparicio, J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4