1UJ8

Structures of ORF3 in Two Crystal Forms, a Member of Isc Machinery of E. coli Involved in the Assembly of Iron-Sulfur Clusters

PDB DOI: https://doi.org/10.2210/pdb1UJ8/pdb

Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Organism(s): Escherichia coli
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2003-07-29 Released: 2005-02-15
Deposition Author(s): Shimomura, Y., Takahashi, Y., Fukuyama, K.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.75 Å
R-Value Free: 0.231
R-Value Work: 0.194

wwPDB Validation 3D Report Full Report

This is version 1.3 of the entry. See complete history.

Literature

Crystal structure of Escherichia coli YfhJ protein, a member of the ISC machinery involved in assembly of iron-sulfur clusters.

Shimomura, Y., Takahashi, Y., Kakuta, Y., Fukuyama, K.

(2005) Proteins 60: 566-569

PubMed: 15937904 Search on PubMed
DOI: https://doi.org/10.1002/prot.20481
Primary Citation of Related Structures:
1UJ8

Organizational Affiliation

Department of Biology, Graduate School of Science, Osaka University, Osaka, Japan.

Macromolecule Content

Total Structure Weight: 9.01 kDa
Atom Count: 704
Modelled Residue Count: 73
Deposited Residue Count: 77
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Hypothetical protein yfhJ	A	77	Escherichia coli	Mutation(s): 0
UniProt
Find proteins for P0C0L9 (Escherichia coli (strain K12)) Explore P0C0L9 Go to UniProtKB: P0C0L9
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P0C0L9
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.75 Å
R-Value Free: 0.231
R-Value Work: 0.194
Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 76.63	α = 90
b = 27.25	β = 111
c = 39.68	γ = 90

Software Package:

Software Name	Purpose
CNS	refinement
HKL-2000	data reduction
SCALEPACK	data scaling
CNS	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2005-02-15

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2005-02-15
Type: Initial release
Version 1.1: 2008-04-27
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2023-12-27
Changes: Data collection, Database references

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.