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Crystal structure of a complex between WT bacteriophage MS2 coat protein and an F5 aptamer RNA stemloop with 2aminopurine substituted at the-10 position
DOI:10.2210/pdb1u1y/pdb   NDB ID: PR0132
1U1Y
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Virus/rna  [ VIPERdb   ]
    Structure Weight: 52144.58
    Molecule: 5'-R(*CP*CP*GP*GP*(2PR)P*GP*GP*AP*UP*CP*AP*CP*CP*AP*CP*GP*G)-3'
    Polymer: 1 Type: rna Length: 17
    Chains: R, S
    Molecule: Coat protein
    Polymer: 2 Type: protein Length: 129
    Chains: A, B, C
    Organism: Enterobacterio phage MS2
    UniProtKB: Protein Feature View | Search PDB | P03612  
     
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  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 2
    Scientific Name: Enterobacterio phage ms2   Taxonomy   Expression System: Escherichia coli  
     
  •   Related PDB Entries Hide
    Identifier Details
    1AQ3  Structure of a MS2 coat protein mutant in complex with an RNA operator 
    1AQ4  Structure of a MS2 coat protein mutant in complex with an RNA operator 
    1BMS  Bacteriophage MS2 capsid; mutation P78N 
    1E6T  MS2-RNA hairpin (5BRU-5) complex 
    1E7X  MS2-RNA hairpin (2ONE-5) complex 
    1ZDS  MS2-RNA hairpin (4ONE-5) complex 
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    2PR
    Search 
    2PR C10 H14 N5 O6 P DG dnaLinking
     
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  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: PR0132
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
No info available for origin of biological assembly
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  •   Deposition Summary Hide
    Authors:   Horn, W.T.,  Convery, M.A.,  Stonehouse, N.J.,  Adams, C.J.,  Liljas, L.,  Phillips, S.E.,  Stockley, P.G.

    Deposition:   2004-07-16
    Release:   2004-12-07
    Last Modified (REVDAT):   2009-02-24
     
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    2011-07-13
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  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
    N/A
    Resolution[Å]:   2.85
    R-Value: 0.188 (obs.)
    R-Free: 0.196
    Space Group: H 3 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 288.61 α = 90.00 
    b = 288.61 β = 90.00 
    c = 654.68 γ = 120.00