1TJI

Crystal Structure of the broadly neutralizing anti-HIV-1 antibody 2F5 in complex with a gp41 17mer epitope

Structural Biology Knowledgebase: 1TJI SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.221
  • R-Value Work: 0.183

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1TJI

Classification: Viral protein / Immune system

Total Structure Weight: 51328.17

Macromolecule Entities
Molecule Chains Length Organism Details
anti-HIV-1 antibody 2F5 Light Chain L 214 Homo sapiens
anti-HIV-1 antibody 2F5 Heavy Chain H 237 Homo sapiens
Envelope Glycoprotein GP41 P 18 Human immunodeficiency virus 1 Fragment: Transmembrane Glycoprotein (residues 653-659)
Gene Name(s): env

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
EDO
Query on EDO

H, L 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
IPA
Query on IPA

H, L ISOPROPYL ALCOHOL
2-PROPANOL (Synonym)
C3 H8 O
KFZMGEQAYNKOFK-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
Modified Residues 2 Unique
ID Chains Type Formula 2D Diagram Parent
YCM
Query on YCM
H, L L-PEPTIDE LINKING C5 H10 N2 O3 S CYS
NH2
Query on NH2
P NON-POLYMER H2 N --

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.221
  • R-Value Work: 0.183
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 58.66 α = 90.00
b = 63.68 β = 90.00
c = 178.38 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2004-06-04
  • Released Date: 2004-10-05
  • Deposition author(s): Ofek, G., Tang, M., Sambor, A., Katinger, H., Mascola, J.R., Wyatt, R., Kwong, P.D.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4