POP-OUT | CLOSE
 
Joint X-ray and NMR Refinement of Yeast L30e-mRNA complex
DOI:10.2210/pdb1t0k/pdb   NDB ID: PR0125
1T0K
ENTRY 1T0K SUPERSEDES 1CK5 1CK8 1CN8 1CN9
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Ribosome
    Structure Weight: 63256.47
    Molecule: 5'-R(*GP*AP*CP*CP*GP*GP*AP*GP*UP*GP*UP*CP*C)-3'
    Polymer: 1 Type: rna Length: 13
    Chains: C
    Molecule: 5'-R(*G*GP*AP*CP*GP*CP*AP*GP*AP*GP*AP*UP*GP*GP*UP*C)-3'
    Polymer: 2 Type: rna Length: 16
    Chains: D
    Molecule: Maltose-binding periplasmic protein
    Polymer: 3 Type: protein Length: 381
    Chains: A
    Organism: Escherichia coli
    Gene Names: malE b4034 JW3994
    UniProtKB: Protein Feature View | Search PDB | P0AEX9  
    Molecule: 60S ribosomal protein L30
    Polymer: 4 Type: protein Length: 105
    Chains: B
    Details: see remark 400, COMPOUND
    Organism: Saccharomyces cerevisiae
    Gene Names: Gene View for RPL30 Gene View for RPL32 YGL030W
    UniProtKB: Protein Feature View | Search PDB | P14120  
     
  •   Structure Validation Hide

    Download full validation report    

     

  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 3
    Scientific Name: Escherichia coli   Taxonomy   Expression System: Escherichia coli  
    Polymer: 4
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast Expression System: Escherichia coli  
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    MTT
    Search 
    Download 
    MTT C24 H42 O21
    MALTOTETRAOSE
    MTT:1T0K
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: PR0125
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors
Downloadable viewers:
 
 
 
  •   MyPDB Personal Annotations Hide
     
  •   Deposition Summary Hide
    Authors:   Chao, J.A.,  Williamson, J.R.

    Deposition:   2004-04-09
    Release:   2004-07-20
    Last Modified (REVDAT):   2009-02-24

    Previous versions:  1CK5 1CK8 1CN8 1CN9
     
  •   Revision History    Hide
    Mouse over text for details
    2011-07-13
    Version format compliance
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
    N/A
    Resolution[Å]:   3.24
    R-Value: 0.269 (obs.)
    R-Free: 0.320
    Space Group: P 41 21 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 136.01 α = 90.00 
    b = 136.01 β = 90.00 
    c = 123.81 γ = 90.00