1T03

HIV-1 reverse transcriptase crosslinked to tenofovir terminated template-primer (complex P)

Structural Biology Knowledgebase: 1T03 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.1 Å
  • R-Value Free: 0.295
  • R-Value Work: 0.256

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1T03

Classification: Transferase / Antibody / DNA

Total Structure Weight: 177532.46


Macromolecule Entities
Molecule Chains Length Organism Details
POL polyprotein A 558 Human immunodeficiency virus 1 EC#: 2.7.7.49 IUBMB
Fragment: Reverse transcriptase, p66 subunit
Mutation: Q258C, C280S
Gene Name(s): gag-pol
POL polyprotein B 437 Human immunodeficiency virus 1 EC#: 2.7.7.49 IUBMB
Fragment: Reverse transcriptase, p51 subunit
Mutation: C280S
Gene Name(s): gag-pol
monoclonal antibody light chain L 211 Mus musculus Fragment: Fab light chain domain
monoclonal antibody heavy chain H 225 Mus musculus Fragment: Fab heavy chain domain
Macromolecule Entities
Molecule Chains Length Organism Details
Synthetic oligonucleotide template T 27 synthetic
Synthetic oligonucleotide primer P 21 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
Modified Residues 2 Unique
ID Chains Type Formula 2D Diagram Parent
MRG
Query on MRG
P DNA LINKING C13 H20 N5 O7 P S DG
TFO
Query on TFO
P DNA LINKING C9 H14 N5 O4 P DA

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.1 Å
  • R-Value Free: 0.295
  • R-Value Work: 0.256
  • Space Group: P 32 1 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 166.78 α = 90.00
b = 166.78 β = 90.00
c = 221.13 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2004-04-07
  • Released Date: 2004-05-11
  • Deposition author(s): Tuske, S., Sarafianos, S.G., Ding, J., Arnold, E.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4