1ST0

Structure of DcpS bound to m7GpppG


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.231
  • R-Value Work: 0.187

Literature

Macromolecules
Sequence Display for 1ST0

Classification: RNA BINDING PROTEIN

Total Structure Weight: 79150.99

Macromolecule Entities
Molecule Chains Length Organism Details
mRNA decapping enzyme A, B 337 Homo sapiens EC#: 3.6.1.59 IUBMB
Mutation: H277N
Gene Name(s): DCPS Gene View DCS1 HINT5 HSPC015
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GTG
Query on GTG

A, B 7-METHYL-GUANOSINE-5'-TRIPHOSPHATE-5'-GUANOSINE
MRNA CAP ANALOG N7-METHYL GPPPG (Synonym)
C21 H30 N10 O18 P3
FHHZHGZBHYYWTG-INFSMZHSSA-O
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
YT3
Query on YT3

A YTTRIUM (III) ION
Y
GRTBAGCGDOYUBE-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.231
  • R-Value Work: 0.187
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 59.45 α = 90.00
b = 94.78 β = 90.00
c = 178.33 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2004-03-24
  • Released Date: 2004-04-13
  • Deposition author(s): Gu, M., Fabrega, C., Liu, S.W., Liu, H., Kiledjian, M., Lima, C.D.

Revision History

  • 2008-04-29
    Type: Version format compliance
  • 2011-07-13
    Type: Version format compliance