1SJ3

Hepatitis Delta Virus Gemonic Ribozyme Precursor, with Mg2+ Bound

Structural Biology Knowledgebase: 1SJ3 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.282
  • R-Value Work: 0.255

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1SJ3

Classification: TRANSLATION / RNA

Total Structure Weight: 36014.85


Macromolecule Entities
Molecule Chains Length Organism Details
small nuclear ribonucleoprotein A P 100 Homo sapiens Fragment: RNA binding domain
Mutation: Y31H, Q36R
Gene Name(s): SNRPA Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
precursor form of the Hepatitis Delta virus ribozyme R 76 Hepatitis delta virus

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MG
Query on MG

R MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.282
  • R-Value Work: 0.255
  • Space Group: H 3 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 108.73 α = 90.00
b = 108.73 β = 90.00
c = 191.73 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2004-03-02
  • Released Date: 2004-05-18
  • Deposition author(s): Ke, A., Zhou, K., Ding, F., Cate, J.H., Doudna, J.A.

Revision History

  • 2011-11-16
    Type: Atom occupancy | Details: Atom occupancy
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4