Crystal structure of the PAZ domain of human eIF2c1 in complex with a 9-mer siRNA-like duplex of deoxynucleotide overhang
DOI:10.2210/pdb1si2/pdb   NDB ID: PH0012
Primary Citation
  •   Molecular Description Hide
    Classification: Gene Regulation/rna/dna
    Structure Weight: 19980.85
    Molecule: 5'-R(*CP*GP*UP*GP*AP*CP*U)-D(P*CP*T)-3'
    Polymer: 1 Type: hybrid Length: 9
    Chains: B
    Molecule: Eukaryotic translation initiation factor 2C 1
    Polymer: 2 Type: protein Length: 149
    Chains: A
    Fragment: PAZ domain (residues 225-369)
    Organism: Homo sapiens
    Gene Names: EIF2C1 Gene View for AGO1
    UniProtKB: Search PDB | Q9UL18   Protein Feature View
  •   Structure Validation Hide

    View the full validation report  


  • MolProbity Ramachandran Plot

  •   Related Citations in PDB Entry (REMARK 1) Hide
  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 2
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli bl21(de3)  
  •   Related PDB Entries Hide
    Identifier Details
  •   External Domain Annotations Hide
  •   Structural Biology Knowledgebase Data Hide
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure:PH0012
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
Biological assembly 1 assigned by authors
Downloadable viewers:
  •   MyPDB Personal Annotations Hide
  •   Deposition Summary Hide
    Authors:   Ye, K.,  Ma, J.B.,  Patel, D.

    Deposition:   2004-02-26
    Release:   2004-05-25
    Last Modified (REVDAT):   2009-02-24
  •   Revision History    Hide
    Mouse over text for details
    Version format compliance
  •   Experimental Details Hide
    Exp. Data:
      Structure Factors
    Resolution[Å]:   2.60
    R-Value: 0.225 (obs.)
    R-Free: 0.261
    Space Group: P 64
    Unit Cell:
      Length [Å] Angles [°]
    a = 100.05 α = 90.00 
    b = 100.05 β = 90.00 
    c = 34.44 γ = 120.00