1SDI

1.65 A structure of Escherichia coli ycfC gene product


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.65 Å
  • R-Value Free: 0.184
  • R-Value Work: 0.150

Literature

Macromolecules
Sequence Display for 1SDI

Classification: structural genomics unknown function

Total Structure Weight: 23135.79

Macromolecule Entities
Molecule Chains Length Organism Details
Hypothetical protein ycfC A 213 Escherichia coli Gene Name(s): hflD ycfC b1132 JW5165
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MPD
Query on MPD

A (4S)-2-METHYL-2,4-PENTANEDIOL
C6 H14 O2
SVTBMSDMJJWYQN-YFKPBYRVSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ACY
Query on ACY

A ACETIC ACID
C2 H4 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.65 Å
  • R-Value Free: 0.184
  • R-Value Work: 0.150
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 42.53 α = 90.00
b = 62.65 β = 90.00
c = 68.82 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2004-02-13
  • Released Date: 2004-08-03
  • Deposition author(s): Borek, D., Otwinowski, Z., Chen, Y., Skarina, T., Savchenko, A., Edwards, A., Midwest Center for Structural Genomics (MCSG)

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4