1SDD

Crystal Structure of Bovine Factor Vai


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.296
  • R-Value Work: 0.252

Literature

Macromolecules
Sequence Display for 1SDD

Classification: BLOOD CLOTTING

Total Structure Weight: 110651.48

Macromolecule Entities
Molecule Chains Length Organism Details
Coagulation factor V A 306 Bos taurus Fragment: A1 Domain (residues 29-305)
Gene Name(s): F5 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Coagulation factor V B 647 Bos taurus Fragment: Light Chain (A3, C1, C2 domains, residues 1565-2211)
Gene Name(s): F5 Gene View

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NDG
Query on NDG

B 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
C8 H15 N O6
OVRNDRQMDRJTHS-PVFLNQBWSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NAG
Query on NAG

A, B N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CU
Query on CU

B COPPER (II) ION
Cu
JPVYNHNXODAKFH-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.296
  • R-Value Work: 0.252
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 63.37 α = 90.00
b = 86.56 β = 90.00
c = 229.20 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2004-02-13
  • Released Date: 2004-06-29
  • Deposition author(s): Adams, T.E., Hockin, M.F., Mann, K.G., Everse, S.J.

Revision History

  • 2007-10-16
    Type: Version format compliance
  • 2011-07-13
    Type: Derived calculations, Version format compliance