1S78

Insights into ErbB signaling from the structure of the ErbB2-pertuzumab complex

Structural Biology Knowledgebase: 1S78 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.25 Å
  • R-Value Free: 0.268
  • R-Value Work: 0.224

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1S78

Classification: TRANSFERASE

Total Structure Weight: 235728.99

Macromolecule Entities
Molecule Chains Length Organism Details
Receptor protein-tyrosine kinase erbB-2 A, B 624 Homo sapiens EC#: 2.7.10.1 IUBMB
Fragment: extracellular domain (residues 23-646)
Gene Name(s): ERBB2 Gene View HER2 MLN19 NEU NGL
Pertuzumab Fab light chain C, E 214 Mus musculus
Pertuzumab Fab heavy chain D, F 226 Mus musculus

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
BMA
Query on BMA

B BETA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-RWOPYEJCSA-N
Ligand Explorer
 
JSmol
NAG
Query on NAG

A, B N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer
 
JSmol

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.25 Å
  • R-Value Free: 0.268
  • R-Value Work: 0.224
  • Space Group: P 43 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 139.41 α = 90.00
b = 139.41 β = 90.00
c = 356.87 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2004-01-29
  • Released Date: 2004-04-27
  • Deposition author(s): Franklin, M.C., Carey, K.D., Vajdos, F.F., Leahy, D.J., de Vos, A.M., Sliwkowski, M.X.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Flag residual B-value | Details: Tagged residual B temperature factor