1RZU

Crystal structure of the glycogen synthase from A. tumefaciens in complex with ADP

Structural Biology Knowledgebase: 1RZU SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.223
  • R-Value Work: 0.180

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1RZU

Classification: transferase

Total Structure Weight: 105769.16

Macromolecule Entities
Molecule Chains Length Organism Details
Glycogen synthase 1 A, B 485 Agrobacterium tumefaciens EC#: 2.4.1.21 IUBMB
Gene Name(s): glgA1 glgA
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ADP
Query on ADP

A, B ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.223
  • R-Value Work: 0.180
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 69.36 α = 90.00
b = 88.11 β = 98.19
c = 84.46 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-12-29
  • Released Date: 2004-08-31
  • Deposition author(s): Buschiazzo, A., Guerin, M.E., Ugalde, J.E., Ugalde, R.A., Shepard, W., Alzari, P.M.

Revision History

  • 2011-07-13
    Type: Refinement description | Details: Fixed TLS group
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Flag residual B-value | Details: Tagged residual B temperature factor