1RYI

STRUCTURE OF GLYCINE OXIDASE WITH BOUND INHIBITOR GLYCOLATE


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.214
  • R-Value Work: 0.177

Literature

Macromolecules
Sequence Display for 1RYI

Classification: OXIDOREDUCTASE

Total Structure Weight: 173993.28

Macromolecule Entities
Molecule Chains Length Organism Details
GLYCINE OXIDASE A, B, C, D 382 Bacillus subtilis EC#: 1.4.3.19 IUBMB
Gene Name(s): thiO goxB yjbR BSU11670
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FAD
Query on FAD

A, B, C, D FLAVIN-ADENINE DINUCLEOTIDE
C27 H33 N9 O15 P2
VWWQXMAJTJZDQX-UYBVJOGSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOA
Query on GOA

A, B, C, D GLYCOLIC ACID
HYDROXYACETIC ACID; HYDROXYETHANOIC ACID (Synonym)
C2 H4 O3
AEMRFAOFKBGASW-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.214
  • R-Value Work: 0.177
  • Space Group: C 2 2 21

Unit Cell:

Length (Å) Angle (°)
a = 73.71 α = 90.00
b = 218.76 β = 90.00
c = 217.80 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-12-22
  • Released Date: 2005-02-22
  • Deposition author(s): Moertl, M., Diederichs, K., Welte, W., Pollegioni, L., Molla, G., Motteran, L., Andriolo, G., Pilone, M.S.

Revision History

  • Version 1_0: 2005-02-22

    Type: Initial release

  • Version 1_1: 2008-04-29

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance

  • Version 1_3: 2017-10-11

    Type: Refinement description