1RY8

Prostaglandin F synthase complexed with NADPH and rutin


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.69 Å
  • R-Value Free: 0.249
  • R-Value Work: 0.205

Literature

Macromolecules
Sequence Display for 1RY8

Classification: OXIDOREDUCTASE

Total Structure Weight: 76504.30

Macromolecule Entities
Molecule Chains Length Organism Details
Aldo-keto reductase family 1 member C3 A, B 323 Homo sapiens Gene Name(s): AKR1C3 Gene View DDH1 HSD17B5 KIAA0119 PGFS
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NDP
Query on NDP

A, B NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
C21 H30 N7 O17 P3
ACFIXJIJDZMPPO-NNYOXOHSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
RUT
Query on RUT

A, B RUTIN
2-(3,4-DIHYDROXYPHENYL)-5,7-DIHYDROXY-4-OXO- 4H-CHROMEN-3-YL 6-O-(6-DEOXY-ALPHA-L-MANNOPYRANOSYL)- BETA-D-GLUCOPYRANOSIDE (Synonym)
C27 H30 O16
IKGXIBQEEMLURG-NVPNHPEKSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.69 Å
  • R-Value Free: 0.249
  • R-Value Work: 0.205
  • Space Group: P 1

Unit Cell:

Length (Å) Angle (°)
a = 47.06 α = 73.90
b = 49.37 β = 86.30
c = 83.59 γ = 69.90

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-12-19
  • Released Date: 2004-11-02
  • Deposition author(s): Komoto, J., Yamada, T., Watanabe, K., Takusagawa, F.

Revision History

  • Version 1_0: 2004-11-02

    Type: Initial release

  • Version 1_1: 2008-04-29

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance

  • Version 1_3: 2017-10-11

    Type: Refinement description