1RY1

Structure of the signal recognition particle interacting with the elongation-arrested ribosome

Structural Biology Knowledgebase: 1RY1 SBKB.org


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Aggregation State: Particle
  • Specimen Type: Vitreous Ice (cryo Em)

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1RY1

Classification: TRANSLATION

Total Structure Weight: 179847.69


Macromolecule Entities
Molecule Chains Length Organism Details
PROTEIN (Signal recognition particle 9 kDa protein) C 85 Homo sapiens Gene Name(s): SRP9 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
PROTEIN (Signal recognition particle 14 kDa protein) D 106 Homo sapiens Gene Name(s): SRP14 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
PROTEIN (Signal recognition particle 19 kDa protein) B 108 Homo sapiens Gene Name(s): SRP19 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Signal recognition particle protein U 296 Thermus aquaticus Gene Name(s): ffh
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Signal recognition particle 54 kDa protein W 109 Mus musculus Gene Name(s): Srp54
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Rhodopsin S 18 Tursiops truncatus Gene Name(s): RHO Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
ALU DOMAIN (RNA FRAGMENTS) E 50 synthetic
ALU DOMAIN (SRP9, SRP14 + RNA) A 128 synthetic
fragment of 7S RNA M 27 synthetic
RNA (31-MER) N 31 synthetic
RNA (5'-R(P*GP*UP*UP*CP*UP*GP*GP*GP*CP*UP*GP*UP*AP*GP*UP*GP*CP*GP*CP*UP*AP*UP*GP*C)-3') O 24 synthetic
RNA (5'-R(*CP*AP*AP*UP*AP*GP*CP*CP*AP*CP*UP*GP*CP*AP*CP*UP*CP*CP*AP*G)-3') P 20 synthetic
RNA (5'-R(P*CP*GP*AP*UP*CP*GP*GP*GP*UP*GP*UP*C)-3') Q 12 synthetic
RNA (5'-R(P*AP*UP*CP*GP*CP*GP*CP*CP*UP*GP*UP*G)-3') R 12 synthetic

Small Molecules
Modified Residues 2 Unique
ID Chains Type Formula 2D Diagram Parent
GDP
Query on GDP
E RNA LINKING C10 H15 N5 O11 P2 G
CCC
Query on CCC
A RNA LINKING C9 H13 N3 O10 P2 C

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Aggregation State: Particle
  • Specimen Type: Vitreous Ice (cryo Em)

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-12-19
  • Released Date: 2004-04-20
  • Deposition author(s): Halic, M., Becker, T., Pool, M.R., Spahn, C.M., Grassucci, R.A., Frank, J., Beckmann, R.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4