1RY0

Structure of prostaglandin F synthase with prostaglandin D2


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.69 Å
  • R-Value Free: 0.248
  • R-Value Work: 0.208

Literature

Macromolecules
Sequence Display for 1RY0

Classification: OXIDOREDUCTASE

Total Structure Weight: 75984.17

Macromolecule Entities
Molecule Chains Length Organism Details
Aldo-keto reductase family 1 member C3 A, B 323 Homo sapiens Gene Name(s): AKR1C3 Gene View DDH1 HSD17B5 KIAA0119 PGFS
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAP
Query on NAP

A, B NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE (Synonym)
C21 H28 N7 O17 P3
XJLXINKUBYWONI-NNYOXOHSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PG2
Query on PG2

A, B PROSTAGLANDIN D2
(5E,13E)-9,15-DIHYDROXY-11-OXOPROSTA-5,13- DIEN-1-OIC ACID (Synonym)
C20 H32 O5
BHMBVRSPMRCCGG-OUTUXVNYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.69 Å
  • R-Value Free: 0.248
  • R-Value Work: 0.208
  • Space Group: P 1

Unit Cell:

Length (Å) Angle (°)
a = 46.97 α = 73.80
b = 49.18 β = 85.90
c = 83.52 γ = 69.80

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-12-19
  • Released Date: 2004-11-02
  • Deposition author(s): Komoto, J., Yamada, T., Watanabe, K., Takusagawa, F.

Revision History

  • 2008-04-29
    Type: Version format compliance
  • 2011-07-13
    Type: Version format compliance