1RV7

Crystal structures of a Multidrug-Resistant HIV-1 Protease Reveal an Expanded Active Site Cavity

Structural Biology Knowledgebase: 1RV7 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.350
  • R-Value Work: 0.271

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1RV7

Classification: hydrolase

Total Structure Weight: 22108.22

Macromolecule Entities
Molecule Chains Length Organism Details
protease A, B 99 Human immunodeficiency virus 1 EC#: 3.4.23.16 IUBMB
Mutation: D25N, M36V, I84V
Gene Name(s): pol

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
AB1
Query on AB1

B N-{1-BENZYL-4-[2-(2,6-DIMETHYL-PHENOXY)-ACETYLAMINO]- 3-HYDROXY-5-PHENYL-PENTYL}-3-METHYL-2-(2- OXO-TETRAHYDRO-PYRIMIDIN-1-YL)-BUTYRAMIDE
ABT-378, LOPINAVIR (Synonym)
C37 H48 N4 O5
KJHKTHWMRKYKJE-SUGCFTRWSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.350
  • R-Value Work: 0.271
  • Space Group: P 41

Unit Cell:

Length (Å) Angle (°)
a = 44.97 α = 90.00
b = 44.97 β = 90.00
c = 103.68 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-12-12
  • Released Date: 2004-12-14
  • Deposition author(s): Logsdon, B.C., Vickrey, J.F., Martin, P., Proteasa, G., Koepke, J.I., Terlecky, S.R., Wawrzak, Z., Winters, M.A., Merigan, T.C., Kovari, L.C.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4