1RP0

Crystal Structure of Thi1 protein from Arabidopsis thaliana


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.171
  • R-Value Work: 0.139

Literature

Macromolecules
Sequence Display for 1RP0

Classification: BIOSYNTHETIC PROTEIN

Total Structure Weight: 61625.11

Macromolecule Entities
Molecule Chains Length Organism Details
Thiazole biosynthetic enzyme A, B 284 Arabidopsis thaliana Gene Name(s): THI1 ARA6 THI4 At5g54770 MBG8.3
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
AHZ
Query on AHZ

A, B ADENOSINE DIPHOSPHATE 5-(BETA-ETHYL)-4-METHYL- THIAZOLE-2-CARBOXYLIC ACID
C17 H19 N6 O12 P2 S
VGXBGQACJQRWLV-LKGUXBDMSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
HTO
Query on HTO

A HEPTANE-1,2,3-TRIOL
C7 H16 O3
HXYCHJFUBNTKQR-RNFRBKRXSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A, B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.171
  • R-Value Work: 0.139
  • Space Group: F 2 2 2

Unit Cell:

Length (Å) Angle (°)
a = 102.36 α = 90.00
b = 133.15 β = 90.00
c = 142.30 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-12-02
  • Released Date: 2005-02-22
  • Deposition author(s): Godoi, P.H.C., Van Sluys, M.A., Menck, C.F.M., Oliva, G.

Revision History

  • 2008-04-29
    Type: Version format compliance
  • 2011-07-13
    Type: Advisory, Derived calculations, Version format compliance