The phiX174 DNA binding protein J in two different capsid environments.
DOI:10.2210/pdb1rb8/pdb   NDB ID: PD0484
1RB8
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Virus/dna  [ VIPERdb   ]
    Structure Weight: 76028.90
    Molecule: Capsid protein
    Polymer: 1 Type: protein Length: 431
    Chains: F
    Organism: Enterobacteria phage alpha3
    Gene Name: F
    UniProtKB: Search PDB | P08767   Protein Feature View
    Molecule: Major spike protein
    Polymer: 2 Type: protein Length: 187
    Chains: G
    Organism: Enterobacteria phage alpha3
    Gene Name: G
    UniProtKB: Search PDB | P31281   Protein Feature View
    Molecule: Small core protein
    Polymer: 3 Type: protein Length: 37
    Chains: J
    Organism: Enterobacteria phage phiX174
    Gene Name: J
    UniProtKB: Search PDB | P69592   Protein Feature View
    Molecule: DNA (5'-D(P*CP*AP*AP*A)-3')
    Polymer: 4 Type: dna Length: 4
    Chains: X
     
  •   Structure Validation Hide

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  •   Source Hide
    Polymer: 1
    Scientific Name: Enterobacteria phage alpha3   Taxonomy    
    Polymer: 2
    Scientific Name: Enterobacteria phage alpha3   Taxonomy    
    Polymer: 3
    Scientific Name: Enterobacteria phage phix174   Taxonomy   Expression System: Escherichia coli  
    Polymer: 4
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    1M06   Wild type alpha3 virion 
    1M0F   Wild type alpha3 procapsid 
    2BPA   Wild type phiX174 virion 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    DC
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    DC C9 H14 N3 O7 P
    2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
     
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  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure:PD0484
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
No info available for origin of biological assembly
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  •   Deposition Summary Hide
    Authors:   Bernal, R.A.,  Hafenstein, S.,  Esmeralda, R.,  Fane, B.A.,  Rossmann, M.G.

    Deposition:   2003-11-03
    Release:   2004-04-13
    Last Modified (REVDAT):   2009-02-24
     
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    2011-07-13
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  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    Resolution[Å]:   3.50
    R-Value: 0.234 (obs.)
    R-Free: 0.236
    Space Group: H 3
    Unit Cell:
      Length [Å] Angles [°]
    a = 295.14 α = 90.00 
    b = 295.14 β = 90.00 
    c = 678.23 γ = 120.00