1RB8

The phiX174 DNA binding protein J in two different capsid environments.

Structural Biology Knowledgebase: 1RB8 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.5 Å
  • R-Value Free: 0.236
  • R-Value Work: 0.234

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1RB8

Classification: Virus / DNA [ VIPERdb ]

Total Structure Weight: 76028.88


Macromolecule Entities
Molecule Chains Length Organism Details
Capsid protein F 431 Enterobacteria phage alpha3 Mutation: R160G
Gene Name(s): F
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Major spike protein G 187 Enterobacteria phage alpha3 Gene Name(s): G
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Small core protein J 37 Enterobacteria phage phix174 sensu lato Gene Name(s): J
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(P*CP*AP*AP*A)-3') X 4 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
DC
Query on DC

X 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
C9 H14 N3 O7 P
NCMVOABPESMRCP-SHYZEUOFSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.5 Å
  • R-Value Free: 0.236
  • R-Value Work: 0.234
  • Space Group: H 3

Unit Cell:

Length (Å) Angle (°)
a = 295.14 α = 90.00
b = 295.14 β = 90.00
c = 678.23 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-11-03
  • Released Date: 2004-04-13
  • Deposition author(s): Bernal, R.A., Hafenstein, S., Esmeralda, R., Fane, B.A., Rossmann, M.G.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4