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Crystal structures of d(Gm5CGm5CGCGC) and d(GCGCGm5CGm5C): Effects of methylation on alternating DNA octamers
DOI:10.2210/pdb1r41/pdb   NDB ID: UD0045
1R41
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: DNA
    Structure Weight: 2456.67
    Molecule: 5'-D(*GP*CP*GP*CP*GP*(5CM)P*GP*(5CM))-3'
    Polymer: 1 Type: dna Length: 8
    Chains: A
     
  •   Structure Validation Hide

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  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    1R3Z  Crystal structures of d(Gm5CGm5CGCGC) and d(GCGCGm5CGm5C): Effects of methylation on alternating DNA octamers 
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    5CM
    Search 
    5CM C10 H16 N3 O7 P DC dnaLinking
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: UD0045
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors
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  •   Deposition Summary Hide
    Authors:   Shi, K.,  Pan, B.,  Tippin, D.,  Sundaralingam, M.

    Deposition:   2003-10-03
    Release:   2003-12-23
    Last Modified (REVDAT):   2009-02-24
     
  •   Revision History    Hide
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    2011-07-13
    Version format compliance
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   1.90
    R-Value: 0.183 (obs.)
    R-Free: 0.198
    Space Group: P 43 21 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 43.12 α = 90.00 
    b = 43.12 β = 90.00 
    c = 24.77 γ = 90.00