POP-OUT | CLOSE
 
Crystal Structure of tRNA Pseudouridine Synthase TruB and Its RNA Complex: RNA-protein Recognition Through a Combination of Rigid Docking and Induced Fit
DOI:10.2210/pdb1r3e/pdb   NDB ID: PR0105
1R3E
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Lyase/rna
    Structure Weight: 51693.28
    Molecule: 5'-R(*CP*UP*GP*UP*GP*UP*(FHU)P*CP*GP*AP*UP*CP*CP*AP*CP*AP*G)-3'
    Polymer: 1 Type: rna Length: 17
    Chains: C
    Molecule: 5'-R(*CP*UP*GP*UP*GP*UP*UP*CP*GP*AP*UP*CP*CP*AP*CP*AP*G)-3'
    Polymer: 2 Type: rna Length: 17
    Chains: D, E
    Molecule: tRNA pseudouridine synthase B
    Polymer: 3 Type: protein Length: 309
    Chains: A
    EC#: 5.4.99.25   
    Organism: Thermotoga maritima
    Gene Names: truB TM_0856
    UniProtKB: Protein Feature View | Search PDB | Q9WZW0  
     
  •   Structure Validation Hide

    Download full validation report    

     

  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 3
    Scientific Name: Thermotoga maritima   Taxonomy   Expression System: Escherichia coli bl21(de3)  
     
  •   Related PDB Entries Hide
    Identifier Details
    1R3F  Crystal Structure of tRNA Pseudouridine Synthase TruB and Its RNA Complex: RNA-protein Recognition Through a Combination of Rigid Docking and Induced Fit 
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    FHU
    Search 
    FHU C9 H14 F N2 O10 P U rnaLinking
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: PR0105
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors
Downloadable viewers:
 
 
 
  •   MyPDB Personal Annotations Hide
     
  •   Deposition Summary Hide
    Authors:   Pan, H.,  Agarwalla, S.,  Moustakas, D.T.,  Finer-Moore, J.,  Stroud, R.M.

    Deposition:   2003-10-01
    Release:   2003-11-04
    Last Modified (REVDAT):   2011-11-16
     
  •   Revision History    Hide
    Mouse over text for details
    2011-11-16
    Atom occupancy
    2011-07-13
    Version format compliance
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.10
    R-Value: 0.223 (obs.)
    R-Free: 0.273
    Space Group: C 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 98.86 α = 90.00 
    b = 159.34 β = 97.77 
    c = 44.54 γ = 90.00