1Q8N

Solution Structure of the Malachite Green RNA Binding Aptamer


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 100
  • Conformers Submitted: 25
  • Selection Criteria: Structures with the Lowest Energy

Literature

Macromolecules
Sequence Display for 1Q8N

Classification: RNA

Total Structure Weight: 12646.88

Macromolecule Entities
Molecule Chains Length Organism Details
RNA Aptamer A 38 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MGR
Query on MGR

A MALACHITE GREEN
C23 H25 N2
VFCNQNZNPKRXIT-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
MGR N/A in BindingDB
N/A in BindingMoad
Kd: 800 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 100
  • Conformers Submitted: 25
  • Selection Criteria: structures with the lowest energy

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-08-21
  • Released Date: 2004-03-23
  • Deposition author(s): Flinders, J., DeFina, S.C., Brackett, D.M., Baugh, C., Wilson, C., Dieckmann, T.

Revision History

  • 2008-04-29
    Type: Version format compliance
  • 2011-07-13
    Type: Version format compliance