1Q4X

Crystal Structure of Human Thyroid Hormone Receptor beta LBD in complex with specific agonist GC-24

Structural Biology Knowledgebase: 1Q4X SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.264
  • R-Value Work: 0.216

Literature

Macromolecules
Sequence Display for 1Q4X

Classification: TRANSCRIPTION

Total Structure Weight: 29335.16

Macromolecule Entities
Molecule Chains Length Organism Details
Thyroid hormone receptor beta-1 A 253 Homo sapiens Fragment: Ligand Binding Domain
Gene Name(s): THRB Gene View ERBA2 NR1A2 THR1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
G24
Query on G24

A [4-(3-BENZYL-4-HYDROXYBENZYL)-3,5-DIMETHYLPHENOXY]ACETIC ACID
GC-24 (Synonym)
C24 H24 O4
JYHIGYLGYNCMGI-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
G24 N/A in BindingDB
N/A in BindingMoad
Kd: 0.33 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.264
  • R-Value Work: 0.216
  • Space Group: P 65 2 2

Unit Cell:

Length (Å) Angle (°)
a = 56.57 α = 90.00
b = 56.57 β = 90.00
c = 390.05 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-08-04
  • Released Date: 2004-02-03
  • Deposition author(s): Borngraeber, S., Budny, M.J., Chiellini, G., Cunha-Lima, S.T., Togashi, M., Webb, P., Baxter, J.D., Scanlan, T.S., Fletterick, R.J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4