1Q3A

Crystal structure of the catalytic domain of human matrix metalloproteinase 10

Structural Biology Knowledgebase: 1Q3A SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.298
  • R-Value Work: 0.276

Literature

Macromolecules
Sequence Display for 1Q3A

Classification: HYDROLASE

Total Structure Weight: 57315.09

Macromolecule Entities
Molecule Chains Length Organism Details
Stromelysin-2 A, B, C 165 Homo sapiens EC#: 3.4.24.22 IUBMB
Fragment: catalytic domain
Mutation: F170N
Gene Name(s): MMP10 Gene View STMY2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NGH
Query on NGH

A, B, C N-ISOBUTYL-N-[4-METHOXYPHENYLSULFONYL]GLYCYL HYDROXAMIC ACID
C13 H20 N2 O5 S
JIRXORZYIXSWOB-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A, B, C ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A, B, C CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.298
  • R-Value Work: 0.276
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 117.15 α = 90.00
b = 61.14 β = 108.68
c = 68.59 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-07-29
  • Released Date: 2004-04-06
  • Deposition author(s): Calderone, V., Bertini, I., Fragai, M., Luchinat, C., Mangani, S., Terni, B.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4