1Q33

Crystal structure of human ADP-ribose pyrophosphatase NUDT9


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.81 Å
  • R-Value Free: 0.231
  • R-Value Work: 0.201

Literature

Macromolecules
Sequence Display for 1Q33

Classification: HYDROLASE

Total Structure Weight: 34070.99

Macromolecule Entities
Molecule Chains Length Organism Details
ADP-ribose pyrophosphatase A 292 Homo sapiens EC#: 3.6.1.13 IUBMB
Fragment: RESIDUES 59-350
Gene Name(s): NUDT9 Gene View NUDT10 Gene View PSEC0099 UNQ3012/PRO9771
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
BGC
Query on BGC

A BETA-D-GLUCOSE
C6 H12 O6
WQZGKKKJIJFFOK-VFUOTHLCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.81 Å
  • R-Value Free: 0.231
  • R-Value Work: 0.201
  • Space Group: I 2 2 2

Unit Cell:

Length (Å) Angle (°)
a = 79.84 α = 90.00
b = 87.50 β = 90.00
c = 119.81 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-07-28
  • Released Date: 2003-09-30
  • Deposition author(s): Shen, B.W., Perraud, A.L., Scharenberg, A., Stoddard, B.L.

Revision History

  • 2008-04-29
    Type: Version format compliance
  • 2011-07-13
    Type: Version format compliance