1Q0R

Crystal structure of aclacinomycin methylesterase (RdmC) with bound product analogue, 10-decarboxymethylaclacinomycin T (DcmaT)

Structural Biology Knowledgebase: 1Q0R SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.45 Å
  • R-Value Free: 0.187
  • R-Value Work: 0.163

Literature

Macromolecules
Sequence Display for 1Q0R

Classification: HYDROLASE

Total Structure Weight: 32675.04

Macromolecule Entities
Molecule Chains Length Organism Details
aclacinomycin methylesterase A 298 Streptomyces purpurascens EC#: 3.1.1.95 IUBMB
Gene Name(s): rdmC
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
AKT
Query on AKT

A 10-DECARBOXYMETHYLACLACINOMYCIN T (DCMAT)
8, (Synonym)
C28 H33 N O8
BLGDWFJQIHBUJY-NWJGULHDSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
1PE
Query on 1PE

A PENTAETHYLENE GLYCOL
PEG400 (Synonym)
C10 H22 O6
JLFNLZLINWHATN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.45 Å
  • R-Value Free: 0.187
  • R-Value Work: 0.163
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 38.20 α = 90.00
b = 84.70 β = 99.99
c = 44.30 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-07-17
  • Released Date: 2003-11-25
  • Deposition author(s): Jansson, A., Niemi, J., Mantsala, P., Schneider, G., Structural Proteomics in Europe (SPINE)

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4