1PWH

Rat Liver L-Serine Dehydratase- Complex with PYRIDOXYL-(O-METHYL-SERINE)-5-MONOPHOSPHATE


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.260
  • R-Value Work: 0.230

Literature

Macromolecules
Sequence Display for 1PWH

Classification: LYASE

Total Structure Weight: 139581.95

Macromolecule Entities
Molecule Chains Length Organism Details
L-serine dehydratase A, B, C, D 327 Rattus norvegicus EC#: 4.3.1.17 IUBMB
Gene Name(s): Sds
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PLV
Query on PLV

A, B, C, D N-({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN- 4-YL}METHYL)-O-METHYL-L-SERINE
PYRIDOXYL-(O-METHYL-SERINE)-5-MONOPHOSPHATE (Synonym)
C12 H19 N2 O8 P
DEHSEGNQBACQEW-JTQLQIEISA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
K
Query on K

A, B, C, D POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.260
  • R-Value Work: 0.230
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 62.24 α = 90.00
b = 109.26 β = 91.66
c = 98.94 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-07-01
  • Released Date: 2003-12-02
  • Deposition author(s): Yamada, T., Komoto, J., Takata, Y., Ogawa, H., Takusagawa, F.

Revision History

  • Version 1_0: 2003-12-02

    Type: Initial release

  • Version 1_1: 2008-04-29

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance

  • Version 1_3: 2017-10-11

    Type: Refinement description