1PU5

GM2-activator Protein crystal structure

Structural Biology Knowledgebase: 1PU5 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.253
  • R-Value Work: 0.214

Literature

Macromolecules
Sequence Display for 1PU5

Classification: LIPID BINDING PROTEIN

Total Structure Weight: 53959.63

Macromolecule Entities
Molecule Chains Length Organism Details
Ganglioside GM2 activator A, B, C 164 Homo sapiens Gene Name(s): GM2A Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
EPE
Query on EPE

A, C 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
HEPES (Synonym)
C8 H18 N2 O4 S
JKMHFZQWWAIEOD-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.253
  • R-Value Work: 0.214
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 63.32 α = 90.00
b = 86.13 β = 90.00
c = 120.21 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-06-24
  • Released Date: 2004-06-29
  • Deposition author(s): Wright, C.S., Zhao, Q., Rastinejad, F.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4